IL_7Q4K_060

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7Q4K|1|AA|C|1400, 7Q4K|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_060 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1078

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7Q4K|1|AA|C|1399
7Q4K|1|AA|C|1400
7Q4K|1|AA|G|1401
*
7Q4K|1|AA|C|1501
7Q4K|1|AA|A|1502
7Q4K|1|AA|A|1503
7Q4K|1|AA|G|1504

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AE

30S ribosomal protein S5

Chain D2

Transfer RNA; tRNA

Chain D4

MsrDL mRNA