IL_7Q4K_061

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_061 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1105

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7Q4K|1|AA|G|1401
7Q4K|1|AA|4OC|1402
7Q4K|1|AA|C|1403
7Q4K|1|AA|C|1404
*
7Q4K|1|AA|G|1497
7Q4K|1|AA|UR3|1498
7Q4K|1|AA|A|1499
7Q4K|1|AA|A|1500
7Q4K|1|AA|C|1501

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain D2

Transfer RNA; tRNA

Chain D4

MsrDL mRNA