IL_7Q4K_086

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_086 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0762

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7Q4K|1|BA|U|703
7Q4K|1|BA|G|704
7Q4K|1|BA|A|705
7Q4K|1|BA|A|706
7Q4K|1|BA|G|707
*
7Q4K|1|BA|U|724
7Q4K|1|BA|G|725
7Q4K|1|BA|G|726
7Q4K|1|BA|A|727
7Q4K|1|BA|G|728

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2