IL_7Q4K_106

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

7Q4K|1|BA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_106 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.1425

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7Q4K|1|BA|C|1043
7Q4K|1|BA|C|1044
7Q4K|1|BA|C|1045
7Q4K|1|BA|A|1046
7Q4K|1|BA|G|1047
7Q4K|1|BA|A|1048
7Q4K|1|BA|C|1049
7Q4K|1|BA|A|1050
7Q4K|1|BA|G|1051
*
7Q4K|1|BA|U|1108
7Q4K|1|BA|C|1109
7Q4K|1|BA|G|1110
7Q4K|1|BA|A|1111
7Q4K|1|BA|G|1112

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6