IL_7Q4K_108

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

7Q4K|1|BA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_108 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3772

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

7Q4K|1|BA|G|1087
7Q4K|1|BA|A|1088
7Q4K|1|BA|A|1089
7Q4K|1|BA|A|1090
7Q4K|1|BA|G|1091
*
7Q4K|1|BA|C|1100
7Q4K|1|BA|U|1101
7Q4K|1|BA|C|1102

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36