IL_7Q4K_114

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_114 not in the Motif Atlas

Homologous match to IL_5J7L_291

Geometric discrepancy: 0.1407

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

7Q4K|1|BA|C|1319
7Q4K|1|BA|C|1320
7Q4K|1|BA|A|1321
7Q4K|1|BA|A|1322
7Q4K|1|BA|C|1323
*
7Q4K|1|BA|G|1331
7Q4K|1|BA|G|1332
7Q4K|1|BA|G|1333

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BT

50S ribosomal protein L23