IL_7Q4K_152

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

7Q4K|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_152 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.4586

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

7Q4K|1|BA|G|2110
7Q4K|1|BA|U|2111
7Q4K|1|BA|G|2112
7Q4K|1|BA|U|2113
7Q4K|1|BA|A|2114
7Q4K|1|BA|G|2115
7Q4K|1|BA|G|2116
7Q4K|1|BA|A|2117
7Q4K|1|BA|U|2118
7Q4K|1|BA|A|2119
7Q4K|1|BA|G|2120
*
7Q4K|1|BA|C|2178
7Q4K|1|BA|C|2179

Current chains

Chain BA

23S rRNA

Nearby chains

Chain D3

Transfer RNA; tRNA