IL_7Q4K_170

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_170 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.0792

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7Q4K|1|BA|C|2652
7Q4K|1|BA|U|2653
7Q4K|1|BA|A|2654
7Q4K|1|BA|G|2655
7Q4K|1|BA|U|2656
7Q4K|1|BA|A|2657
7Q4K|1|BA|C|2658
*
7Q4K|1|BA|G|2663
7Q4K|1|BA|G|2664
7Q4K|1|BA|A|2665
7Q4K|1|BA|C|2666
7Q4K|1|BA|C|2667
7Q4K|1|BA|G|2668

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L6