IL_7Q4K_193

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_193 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0678

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7Q4K|1|BA|U|1851
7Q4K|1|BA|U|1852
7Q4K|1|BA|A|1853
7Q4K|1|BA|A|1854
7Q4K|1|BA|U|1855
7Q4K|1|BA|U|1856
7Q4K|1|BA|G|1857
7Q4K|1|BA|A|1858
7Q4K|1|BA|U|1859
7Q4K|1|BA|G|1860
*
7Q4K|1|BA|U|1882
7Q4K|1|BA|U|1883
7Q4K|1|BA|G|1884
7Q4K|1|BA|A|1885
7Q4K|1|BA|U|1886
7Q4K|1|BA|C|1887
7Q4K|1|BA|G|1888
7Q4K|1|BA|A|1889
7Q4K|1|BA|A|1890
7Q4K|1|BA|G|1891

Current chains

Chain BA

23S rRNA

Nearby chains

Chain D3

Transfer RNA; tRNA