IL_7QCA_001

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AGGGAUC*GUGAAAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_001 not in the Motif Atlas

Geometric match to IL_5J7L_245

Geometric discrepancy: 0.1056

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|A|13
7QCA|1|L50|G|14
7QCA|1|L50|G|15
7QCA|1|L50|G|16
7QCA|1|L50|A|17
7QCA|1|L50|U|18
7QCA|1|L50|C|19
*
7QCA|1|L50|G|422
7QCA|1|L50|U|423
7QCA|1|L50|G|424
7QCA|1|L50|A|425
7QCA|1|L50|A|426
7QCA|1|L50|A|427
7QCA|1|L50|U|428

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LEE

60S ribosomal protein L32

Chain LP0

60S ribosomal protein L17