IL_7QCA_003

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

7QCA|1|L50|A|384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_003 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1507

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7QCA|1|L50|G|25
7QCA|1|L50|C|26
*
7QCA|1|L50|G|383
7QCA|1|L50|A|384
7QCA|1|L50|C|385

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LY0

60S ribosomal protein L26