IL_7QCA_009

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

7QCA|1|L50|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_009 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1488

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|A|215
7QCA|1|L50|U|216
*
7QCA|1|L50|A|229
7QCA|1|L50|G|230
7QCA|1|L50|U|231
7QCA|1|L50|U|232
7QCA|1|L50|G|233
7QCA|1|L50|U|234

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LG0

60S ribosomal protein L8

Chain LN0

Ribosomal protein L15