IL_7QCA_014

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UUG*CA

Length

5 nucleotides

Bulged bases

7QCA|1|L50|U|563

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_014 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.1872

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

7QCA|1|L50|U|562
7QCA|1|L50|U|563
7QCA|1|L50|G|564
*
7QCA|1|L50|C|678
7QCA|1|L50|A|679

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LJJ

eL37 LJJ

Chain LN0

Ribosomal protein L15