IL_7QCA_023

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AGA*UU

Length

5 nucleotides

Bulged bases

7QCA|1|L50|G|732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_023 not in the Motif Atlas

Geometric match to IL_5TBW_037

Geometric discrepancy: 0.2237

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

7QCA|1|L50|A|731
7QCA|1|L50|G|732
7QCA|1|L50|A|733
*
7QCA|1|L50|U|797
7QCA|1|L50|U|798

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LF0

60S ribosomal protein L7

Chain LQ0

60S ribosomal protein L18

Chain LT0

60s ribosomal protein L21