IL_7QCA_026

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

7QCA|1|L50|G|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_026 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.3835

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

7QCA|1|L50|G|745
7QCA|1|L50|A|746
*
7QCA|1|L50|U|781
7QCA|1|L50|G|782
7QCA|1|L50|C|783

Current chains

Chain L50

RNA 23S

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LD0

60S ribosomal protein L5

Chain LI0

S60 ribosomal protein L10

Chain LT0

60s ribosomal protein L21