IL_7QCA_028

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_028 not in the Motif Atlas

Homologous match to IL_5TBW_042

Geometric discrepancy: 0.4784

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QCA|1|L50|G|752
7QCA|1|L50|G|753
7QCA|1|L50|C|754
*
7QCA|1|L50|G|774
7QCA|1|L50|A|775
7QCA|1|L50|C|776

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LI0

S60 ribosomal protein L10