IL_7QCA_030

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGA*UGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_030 not in the Motif Atlas

Homologous match to IL_8C3A_049

Geometric discrepancy: 0.3532

The information below is about IL_8C3A_049

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QCA|1|L50|C|817
7QCA|1|L50|G|818
7QCA|1|L50|A|819
*
7QCA|1|L50|U|837
7QCA|1|L50|G|838
7QCA|1|L50|G|839

Current chains

Chain L50

RNA 23S

Nearby chains

Chain L70

5S ribosomal RNA; 5S rRNA

Chain LF0

60S ribosomal protein L7