IL_7QCA_033

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GACAGAG*CUUAC

Length

12 nucleotides

Bulged bases

7QCA|1|L50|G|889, 7QCA|1|L50|U|1009, 7QCA|1|L50|A|1010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|G|885
7QCA|1|L50|A|886
7QCA|1|L50|C|887
7QCA|1|L50|A|888
7QCA|1|L50|G|889
7QCA|1|L50|A|890
7QCA|1|L50|G|891
*
7QCA|1|L50|C|1007
7QCA|1|L50|U|1008
7QCA|1|L50|U|1009
7QCA|1|L50|A|1010
7QCA|1|L50|C|1011

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LH0

60S ribosomal protein L9

Chain LM0

eL14 LM0

Chain LMM

Ubiquitin

Chain LO0

Ribosomal protein L13A

Chain LS0

60S ribosomal protein L20