IL_7QCA_035

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAG*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_035 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.2613

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7QCA|1|L50|G|899
7QCA|1|L50|A|900
7QCA|1|L50|G|901
*
7QCA|1|L50|U|990
7QCA|1|L50|C|991

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LI0

S60 ribosomal protein L10

Chain LMM

Ubiquitin