IL_7QCA_037

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7QCA|1|L50|C|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_037 not in the Motif Atlas

Homologous match to IL_5TBW_059

Geometric discrepancy: 0.2809

The information below is about IL_5TBW_059

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

7QCA|1|L50|U|1057
7QCA|1|L50|G|1058
7QCA|1|L50|G|1059
7QCA|1|L50|C|1060
7QCA|1|L50|G|1061
7QCA|1|L50|A|1062
7QCA|1|L50|A|1063
7QCA|1|L50|G|1064
*
7QCA|1|L50|U|1083
7QCA|1|L50|G|1084
7QCA|1|L50|G|1085
7QCA|1|L50|A|1086
7QCA|1|L50|G|1087

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LC0

60S ribosomal protein L4

Chain LE0

60S ribosomal protein L6

Chain LEE

60S ribosomal protein L32

Chain LY0

60S ribosomal protein L26