IL_7QCA_038

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGU*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_038 not in the Motif Atlas

Geometric match to IL_4KQ0_002

Geometric discrepancy: 0.1551

The information below is about IL_4KQ0_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

7QCA|1|L50|G|1064
7QCA|1|L50|G|1065
7QCA|1|L50|U|1066
*
7QCA|1|L50|G|1081
7QCA|1|L50|G|1082
7QCA|1|L50|U|1083

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LEE

60S ribosomal protein L32