IL_7QCA_040

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_040 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1133

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

7QCA|1|L50|G|1159
7QCA|1|L50|G|1160
7QCA|1|L50|U|1161
7QCA|1|L50|U|1162
*
7QCA|1|L50|A|1446
7QCA|1|L50|C|1447

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LJJ

eL37 LJJ

Chain LLL

60S ribosomal protein L39

Chain LX0

60S ribosomal protein L23a