IL_7QCA_044

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_044 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.1992

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QCA|1|L50|A|1286
7QCA|1|L50|A|1287
7QCA|1|L50|C|1288
*
7QCA|1|L50|G|1405
7QCA|1|L50|G|1406
7QCA|1|L50|U|1407

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LGG

Ribosomal protein L34

Chain LPP

60S ribosomal protein L37a

Chain LR0

60S ribosomal protein L19