IL_7QCA_052

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUUCGG*CUGU

Length

10 nucleotides

Bulged bases

7QCA|1|L50|G|1771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_052 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.0966

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7QCA|1|L50|A|1508
7QCA|1|L50|U|1509
7QCA|1|L50|U|1510
7QCA|1|L50|C|1511
7QCA|1|L50|G|1512
7QCA|1|L50|G|1513
*
7QCA|1|L50|C|1769
7QCA|1|L50|U|1770
7QCA|1|L50|G|1771
7QCA|1|L50|U|1772

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LV0

Ribosomal protein L23