IL_7QCA_053

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7QCA|1|L50|G|1538

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_053 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.0935

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|C|1525
7QCA|1|L50|G|1526
7QCA|1|L50|U|1527
7QCA|1|L50|A|1528
7QCA|1|L50|A|1529
7QCA|1|L50|C|1530
*
7QCA|1|L50|G|1535
7QCA|1|L50|G|1536
7QCA|1|L50|A|1537
7QCA|1|L50|G|1538
7QCA|1|L50|A|1539
7QCA|1|L50|A|1540
7QCA|1|L50|G|1541

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LPP

60S ribosomal protein L37a

Chain S60

Small subunit ribosomal RNA; SSU rRNA