IL_7QCA_055

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

7QCA|1|L50|C|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_055 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1406

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QCA|1|L50|C|1633
7QCA|1|L50|C|1634
7QCA|1|L50|G|1635
7QCA|1|L50|G|1636
*
7QCA|1|L50|C|1681
7QCA|1|L50|G|1682

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain S60

Small subunit ribosomal RNA; SSU rRNA