IL_7QCA_059

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_059 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.1344

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

7QCA|1|L50|G|1712
7QCA|1|L50|C|1713
*
7QCA|1|L50|G|1743
7QCA|1|L50|C|1744
7QCA|1|L50|A|1745
7QCA|1|L50|U|1746

Current chains

Chain L50

RNA 23S

Nearby chains