IL_7QCA_065

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

7QCA|1|L50|A|2176

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_065 not in the Motif Atlas

Homologous match to IL_8C3A_099

Geometric discrepancy: 0.1195

The information below is about IL_8C3A_099

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7QCA|1|L50|G|1847
7QCA|1|L50|A|1848
*
7QCA|1|L50|U|2175
7QCA|1|L50|A|2176
7QCA|1|L50|C|2177
7QCA|1|L50|C|2178

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8