IL_7QCA_068

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

ACG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_068 not in the Motif Atlas

Geometric match to IL_5TBW_127

Geometric discrepancy: 0.1926

The information below is about IL_5TBW_127

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7QCA|1|L50|A|1876
7QCA|1|L50|C|1877
7QCA|1|L50|G|1878
*
7QCA|1|L50|C|1940
7QCA|1|L50|A|1941
7QCA|1|L50|U|1942

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LII

60S ribosomal protein L36

Chain SB0

eS1 SB0