IL_7QCA_077

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCGAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_077 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1797

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7QCA|1|L50|C|2203
7QCA|1|L50|C|2204
7QCA|1|L50|G|2205
7QCA|1|L50|A|2206
7QCA|1|L50|G|2207
*
7QCA|1|L50|C|2217
7QCA|1|L50|G|2218
7QCA|1|L50|A|2219
7QCA|1|L50|C|2220
7QCA|1|L50|G|2221

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LI0

S60 ribosomal protein L10

Chain LMM

Ubiquitin