IL_7QCA_080

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7QCA|1|L50|A|2309, 7QCA|1|L50|C|2310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_080 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1314

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7QCA|1|L50|C|2249
7QCA|1|L50|U|2250
*
7QCA|1|L50|A|2308
7QCA|1|L50|A|2309
7QCA|1|L50|C|2310
7QCA|1|L50|G|2311

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LV0

Ribosomal protein L23