IL_7QCA_087

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

7QCA|1|L50|C|2453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_087 not in the Motif Atlas

Geometric match to IL_4WF9_101

Geometric discrepancy: 0.1119

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

7QCA|1|L50|C|2411
7QCA|1|L50|C|2412
7QCA|1|L50|U|2413
7QCA|1|L50|C|2414
7QCA|1|L50|U|2415
*
7QCA|1|L50|A|2452
7QCA|1|L50|C|2453
7QCA|1|L50|G|2454

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LV0

Ribosomal protein L23

Chain LW0

Ribosomal protein L24E