IL_7QCA_088

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGCAG*CCAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_088 not in the Motif Atlas

Geometric match to IL_4V9F_022

Geometric discrepancy: 0.3782

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7QCA|1|L50|U|2418
7QCA|1|L50|G|2419
7QCA|1|L50|C|2420
7QCA|1|L50|A|2421
7QCA|1|L50|G|2422
*
7QCA|1|L50|C|2445
7QCA|1|L50|C|2446
7QCA|1|L50|A|2447
7QCA|1|L50|U|2448
7QCA|1|L50|G|2449

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LDD

60S ribosomal protein L31

Chain LW0

Ribosomal protein L24E