IL_7QCA_090

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AAGCAU*AGAAAU

Length

12 nucleotides

Bulged bases

7QCA|1|L50|A|2490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_090 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.2528

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7QCA|1|L50|A|2462
7QCA|1|L50|A|2463
7QCA|1|L50|G|2464
7QCA|1|L50|C|2465
7QCA|1|L50|A|2466
7QCA|1|L50|U|2467
*
7QCA|1|L50|A|2487
7QCA|1|L50|G|2488
7QCA|1|L50|A|2489
7QCA|1|L50|A|2490
7QCA|1|L50|A|2491
7QCA|1|L50|U|2492

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LH0

60S ribosomal protein L9

Chain LMM

Ubiquitin

Chain LO0

Ribosomal protein L13A