IL_7QCA_093

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGUACG*UUGAG

Length

11 nucleotides

Bulged bases

7QCA|1|L50|G|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QCA_093 not in the Motif Atlas

Geometric match to IL_4V9F_099

Geometric discrepancy: 0.0908

The information below is about IL_4V9F_099

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

7QCA|1|L50|U|2547
7QCA|1|L50|G|2548
7QCA|1|L50|U|2549
7QCA|1|L50|A|2550
7QCA|1|L50|C|2551
7QCA|1|L50|G|2552
*
7QCA|1|L50|U|2586
7QCA|1|L50|U|2587
7QCA|1|L50|G|2588
7QCA|1|L50|A|2589
7QCA|1|L50|G|2590

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LDD

60S ribosomal protein L31

Chain LW0

Ribosomal protein L24E