IL_7QCA_115

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUCAG*CGUAGACG

Length

14 nucleotides

Bulged bases

7QCA|1|S60|U|219, 7QCA|1|S60|A|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|217
7QCA|1|S60|A|218
7QCA|1|S60|U|219
7QCA|1|S60|C|220
7QCA|1|S60|A|221
7QCA|1|S60|G|222
*
7QCA|1|S60|C|252
7QCA|1|S60|G|253
7QCA|1|S60|U|254
7QCA|1|S60|A|255
7QCA|1|S60|G|256
7QCA|1|S60|A|257
7QCA|1|S60|C|258
7QCA|1|S60|G|259

Current chains

Chain S60

RNA SSU

Nearby chains

Chain L50

Large subunit ribosomal RNA; LSU rRNA

Chain SI0

40S ribosomal protein S8

Chain SL0

40S ribosomal protein S11

Chain SX0

uS12 SX0