IL_7QCA_127

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAGUAC*GAAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|C|507
7QCA|1|S60|A|508
7QCA|1|S60|G|509
7QCA|1|S60|U|510
7QCA|1|S60|A|511
7QCA|1|S60|C|512
*
7QCA|1|S60|G|552
7QCA|1|S60|A|553
7QCA|1|S60|A|554
7QCA|1|S60|G|555
7QCA|1|S60|A|556
7QCA|1|S60|G|557

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SH0

40S ribosomal protein S7

Chain SL0

40S ribosomal protein S11

Chain SW0

40S ribosomal protein S15A

Chain SX0

uS12 SX0