IL_7QCA_128

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGUAAUGU*GAAUAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|U|518
7QCA|1|S60|G|519
7QCA|1|S60|U|520
7QCA|1|S60|A|521
7QCA|1|S60|A|522
7QCA|1|S60|U|523
7QCA|1|S60|G|524
7QCA|1|S60|U|525
*
7QCA|1|S60|G|541
7QCA|1|S60|A|542
7QCA|1|S60|A|543
7QCA|1|S60|U|544
7QCA|1|S60|A|545
7QCA|1|S60|G|546

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SE0

40S ribosomal protein S4

Chain SJ0

40S ribosomal protein S9

Chain SL0

40S ribosomal protein S11

Chain SW0

40S ribosomal protein S15A