IL_7QCA_178

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGCAUGG*UCAGUGAUG

Length

16 nucleotides

Bulged bases

7QCA|1|S60|C|941, 7QCA|1|S60|A|1063, 7QCA|1|S60|G|1066

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|U|939
7QCA|1|S60|G|940
7QCA|1|S60|C|941
7QCA|1|S60|A|942
7QCA|1|S60|U|943
7QCA|1|S60|G|944
7QCA|1|S60|G|945
*
7QCA|1|S60|U|1061
7QCA|1|S60|C|1062
7QCA|1|S60|A|1063
7QCA|1|S60|G|1064
7QCA|1|S60|U|1065
7QCA|1|S60|G|1066
7QCA|1|S60|A|1067
7QCA|1|S60|U|1068
7QCA|1|S60|G|1069

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SD0

40S ribosomal protein S3

Chain SDD

40S ribosomal protein S29

Chain SK0

40S ribosomal protein S10

Chain SU0

40S ribosomal protein S20