IL_7QG8_020

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0771

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7QG8|1|0|U|409
7QG8|1|0|G|410
7QG8|1|0|A|411
7QG8|1|0|A|412
7QG8|1|0|G|413
7QG8|1|0|A|414
7QG8|1|0|A|415
7QG8|1|0|G|416
*
7QG8|1|0|U|427
7QG8|1|0|G|428
7QG8|1|0|U|429
7QG8|1|0|A|430
7QG8|1|0|A|431
7QG8|1|0|A|432
7QG8|1|0|G|433

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4