IL_7QG8_077

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7QG8|1|N|A|504, 7QG8|1|N|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_077 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7QG8|1|N|G|481
7QG8|1|N|A|482
7QG8|1|N|A|483
7QG8|1|N|C|484
*
7QG8|1|N|G|496
7QG8|1|N|A|497
7QG8|1|N|G|498
7QG8|1|N|U|499
7QG8|1|N|G|500
7QG8|1|N|A|501
7QG8|1|N|A|502
7QG8|1|N|A|503
7QG8|1|N|A|504
7QG8|1|N|A|505
7QG8|1|N|G|506
7QG8|1|N|A|507
7QG8|1|N|A|508
7QG8|1|N|C|509

Current chains

Chain N

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L22

Chain h

50S ribosomal protein L24