IL_7QG8_095

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_095 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1925

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7QG8|1|N|G|875
7QG8|1|N|C|876
7QG8|1|N|A|877
7QG8|1|N|A|878
7QG8|1|N|G|879
*
7QG8|1|N|C|898
7QG8|1|N|A|899
7QG8|1|N|A|900
7QG8|1|N|C|901
7QG8|1|N|C|902

Current chains

Chain N

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L16