IL_7QG8_129

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

7QG8|1|N|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QG8_129 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.0796

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7QG8|1|N|A|1669
7QG8|1|N|C|1670
7QG8|1|N|U|1671
7QG8|1|N|A|1672
7QG8|1|N|G|1673
7QG8|1|N|G|1674
*
7QG8|1|N|C|1990
7QG8|1|N|U|1991
7QG8|1|N|G|1992
7QG8|1|N|U|1993

Current chains

Chain N

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L3

Chain X

50S ribosomal protein L14