IL_7QGH_020

3D structure

PDB id

7QGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.48 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGH_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0772

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7QGH|1|0|U|409
7QGH|1|0|G|410
7QGH|1|0|A|411
7QGH|1|0|A|412
7QGH|1|0|G|413
7QGH|1|0|A|414
7QGH|1|0|A|415
7QGH|1|0|G|416
*
7QGH|1|0|U|427
7QGH|1|0|G|428
7QGH|1|0|U|429
7QGH|1|0|A|430
7QGH|1|0|A|431
7QGH|1|0|A|432
7QGH|1|0|G|433

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 3

30S ribosomal protein S4