7QGH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QGH_001 | No text annotation | ||
| HL_7QGH_002 | No text annotation | ||
| HL_7QGH_113 | No text annotation | ||
| HL_7QGH_003 | GNRA | ||
| HL_7QGH_004 | GNRA | ||
| HL_7QGH_005 | No text annotation | ||
| HL_7QGH_006 | GNRA related | ||
| HL_7QGH_007 | GNRA | ||
| HL_7QGH_008 | No text annotation | ||
| HL_7QGH_009 | UNCG | ||
| HL_7QGH_010 | GNRA | ||
| HL_7QGH_011 | UNCG | ||
| HL_7QGH_012 | GNRA wlth extra near cWW | ||
| HL_7QGH_013 | No text annotation | ||
| HL_7QGH_014 | GNRA-like with tWH | ||
| HL_7QGH_015 | No text annotation | ||
| HL_7QGH_016 | GNRA | ||
| HL_7QGH_017 | No text annotation | ||
| HL_7QGH_018 | Externally structured | ||
| HL_7QGH_019 | GNRA | ||
| HL_7QGH_020 | GNRA | ||
| HL_7QGH_021 | No text annotation | ||
| HL_7QGH_022 | No text annotation | ||
| HL_7QGH_110 | No text annotation | ||
| HL_7QGH_023 | No text annotation | ||
| HL_7QGH_024 | GNRA | ||
| HL_7QGH_025 | T-loop related | ||
| HL_7QGH_026 | No text annotation | ||
| HL_7QGH_027 | GNRA | ||
| HL_7QGH_028 | GNRA | ||
| HL_7QGH_029 | T-loop with 3 stacked bulged bases | ||
| HL_7QGH_030 | No text annotation | ||
| HL_7QGH_031 | UNCG | ||
| HL_7QGH_032 | GNRA | ||
| HL_7QGH_033 | No text annotation | ||
| HL_7QGH_034 | tRNA anticodon loop | ||
| HL_7QGH_035 | T-loop with 2 stacked bulged bases | ||
| HL_7QGH_036 | No text annotation | ||
| HL_7QGH_037 | No text annotation | ||
| HL_7QGH_038 | No text annotation | ||
| HL_7QGH_039 | No text annotation | ||
| HL_7QGH_040 | No text annotation | ||
| HL_7QGH_041 | No text annotation | ||
| HL_7QGH_042 | No text annotation | ||
| HL_7QGH_043 | No text annotation | ||
| HL_7QGH_044 | T-loop with 1 bulged base | ||
| HL_7QGH_045 | No text annotation | ||
| HL_7QGH_046 | T-loop with unstacked turn | ||
| HL_7QGH_047 | No text annotation | ||
| HL_7QGH_048 | Pseudoknot geometry | ||
| HL_7QGH_049 | GNRA | ||
| HL_7QGH_050 | GNRA | ||
| HL_7QGH_051 | No text annotation | ||
| HL_7QGH_052 | T-loop with 2 stacked bulged bases | ||
| HL_7QGH_053 | No text annotation | ||
| HL_7QGH_054 | GNRA | ||
| HL_7QGH_055 | No text annotation | ||
| HL_7QGH_056 | GNRA wlth tandem sheared | ||
| HL_7QGH_057 | No text annotation | ||
| HL_7QGH_058 | UNCG variation | ||
| HL_7QGH_059 | No text annotation | ||
| HL_7QGH_060 | No text annotation | ||
| HL_7QGH_061 | GNRA | ||
| HL_7QGH_062 | No text annotation | ||
| HL_7QGH_063 | No text annotation | ||
| HL_7QGH_064 | GNRA wlth tandem sheared | ||
| HL_7QGH_065 | No text annotation | ||
| HL_7QGH_066 | GNRA | ||
| HL_7QGH_067 | T-loop with 2 stacked bulged bases | ||
| HL_7QGH_068 | Pseudoknot geometry with 3' bulge | ||
| HL_7QGH_069 | GNRA | ||
| HL_7QGH_070 | No text annotation | ||
| HL_7QGH_071 | Mini UNCG | ||
| HL_7QGH_072 | Pseudoknot geometry with 3' bulge | ||
| HL_7QGH_073 | UNCG | ||
| HL_7QGH_074 | No text annotation | ||
| HL_7QGH_075 | No text annotation | ||
| HL_7QGH_076 | GNRA | ||
| HL_7QGH_077 | No text annotation | ||
| HL_7QGH_078 | No text annotation | ||
| HL_7QGH_079 | No text annotation | ||
| HL_7QGH_080 | No text annotation | ||
| HL_7QGH_081 | GNRA related | ||
| HL_7QGH_082 | GNRA variation | ||
| HL_7QGH_083 | No text annotation | ||
| HL_7QGH_084 | No text annotation | ||
| HL_7QGH_085 | No text annotation | ||
| HL_7QGH_086 | No text annotation | ||
| HL_7QGH_087 | No text annotation | ||
| HL_7QGH_088 | No text annotation | ||
| HL_7QGH_089 | No text annotation | ||
| HL_7QGH_090 | No text annotation | ||
| HL_7QGH_111 | No text annotation | ||
| HL_7QGH_091 | Pseudoknot geometry | ||
| HL_7QGH_092 | GNRA | ||
| HL_7QGH_093 | GNRA | ||
| HL_7QGH_094 | No text annotation | ||
| HL_7QGH_095 | No text annotation | ||
| HL_7QGH_096 | GNRA variation | ||
| HL_7QGH_097 | No text annotation | ||
| HL_7QGH_098 | GNRA | ||
| HL_7QGH_099 | GNRA | ||
| HL_7QGH_100 | Ribsomal LSU H95 | ||
| HL_7QGH_101 | No text annotation | ||
| HL_7QGH_102 | Mini UNCG | ||
| HL_7QGH_103 | No text annotation | ||
| HL_7QGH_104 | GNRA | ||
| HL_7QGH_112 | No text annotation | ||
| HL_7QGH_105 | No text annotation | ||
| HL_7QGH_106 | Mini UNCG | ||
| HL_7QGH_107 | No text annotation | ||
| HL_7QGH_108 | tRNA anticodon loop | ||
| HL_7QGH_109 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QGH_001 | Single bulged G | ||
| IL_7QGH_002 | Single bulged A | ||
| IL_7QGH_003 | No text annotation | ||
| IL_7QGH_004 | Minor groove platform | ||
| IL_7QGH_005 | Multiple bulged bases | ||
| IL_7QGH_006 | Minor groove platform with extra cWW | ||
| IL_7QGH_007 | Minor groove platform | ||
| IL_7QGH_008 | Single bulged G | ||
| IL_7QGH_009 | Isolated non-canonical cWW pair | ||
| IL_7QGH_010 | Minor groove platform related | ||
| IL_7QGH_011 | Isolated cWH basepair | ||
| IL_7QGH_012 | tWH-tWH-tHW-tHW | ||
| IL_7QGH_013 | Minor groove platform | ||
| IL_7QGH_014 | Kink-turn with non-sequential stacking | ||
| IL_7QGH_015 | No text annotation | ||
| IL_7QGH_016 | C-loop | ||
| IL_7QGH_017 | Single bulged U | ||
| IL_7QGH_018 | C-loop | ||
| IL_7QGH_019 | Single bulged G | ||
| IL_7QGH_020 | No text annotation | ||
| IL_7QGH_021 | No text annotation | ||
| IL_7QGH_022 | tSH-tHW-tWW | ||
| IL_7QGH_023 | No text annotation | ||
| IL_7QGH_024 | SSU/LSU pseudoknot | ||
| IL_7QGH_025 | Kink-turn related | ||
| IL_7QGH_026 | No text annotation | ||
| IL_7QGH_027 | tSH-tHW-tHS | ||
| IL_7QGH_028 | Major groove platform | ||
| IL_7QGH_029 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGH_030 | No text annotation | ||
| IL_7QGH_031 | Major groove platform; stack outside cWW | ||
| IL_7QGH_032 | Single stack bend | ||
| IL_7QGH_033 | Tandem non-canonical cWW pairs | ||
| IL_7QGH_179 | Triple non-canonical cWW pairs | ||
| IL_7QGH_034 | No text annotation | ||
| IL_7QGH_035 | Kink-turn | ||
| IL_7QGH_036 | Left turn | ||
| IL_7QGH_037 | tSH-tHW-tHS | ||
| IL_7QGH_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7QGH_039 | Single bulged A | ||
| IL_7QGH_040 | Single bulged G | ||
| IL_7QGH_041 | Minor groove platform | ||
| IL_7QGH_042 | Minor groove platform | ||
| IL_7QGH_043 | Minor groove platform | ||
| IL_7QGH_044 | Single stack bend | ||
| IL_7QGH_045 | Single stack bend | ||
| IL_7QGH_046 | Single bulged U | ||
| IL_7QGH_047 | Tandem non-canonical cWW pairs | ||
| IL_7QGH_180 | Isolated cWS basepair | ||
| IL_7QGH_048 | Minor groove platform | ||
| IL_7QGH_049 | Single bulged A | ||
| IL_7QGH_050 | Isolated non-canonical cWW pair | ||
| IL_7QGH_051 | No text annotation | ||
| IL_7QGH_052 | Minor groove platform | ||
| IL_7QGH_053 | No text annotation | ||
| IL_7QGH_054 | No text annotation | ||
| IL_7QGH_055 | 180 degree turn | ||
| IL_7QGH_056 | Double sheared with non-canonical cWW | ||
| IL_7QGH_057 | No text annotation | ||
| IL_7QGH_058 | No text annotation | ||
| IL_7QGH_059 | No text annotation | ||
| IL_7QGH_060 | Isolated non-canonical cWW pair | ||
| IL_7QGH_061 | Decoding loop related | ||
| IL_7QGH_062 | Isolated non-canonical cWW pair | ||
| IL_7QGH_063 | Double sheared | ||
| IL_7QGH_064 | Triple sheared related | ||
| IL_7QGH_065 | Single bulged A | ||
| IL_7QGH_066 | No text annotation | ||
| IL_7QGH_067 | Triple sheared with non-canonical cWW | ||
| IL_7QGH_068 | Single bulged A | ||
| IL_7QGH_069 | Minor groove platform | ||
| IL_7QGH_070 | No text annotation | ||
| IL_7QGH_071 | Single stack bend | ||
| IL_7QGH_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGH_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7QGH_074 | No text annotation | ||
| IL_7QGH_075 | No text annotation | ||
| IL_7QGH_076 | No text annotation | ||
| IL_7QGH_077 | No text annotation | ||
| IL_7QGH_078 | Double sheared | ||
| IL_7QGH_079 | Isolated non-canonical cWW pair | ||
| IL_7QGH_080 | AAA cross-strand stack | ||
| IL_7QGH_081 | No text annotation | ||
| IL_7QGH_082 | tHW-tHW cross-strand stack | ||
| IL_7QGH_083 | Single bulged A | ||
| IL_7QGH_084 | Single bulged G | ||
| IL_7QGH_085 | Triple sheared | ||
| IL_7QGH_086 | Major groove platform | ||
| IL_7QGH_087 | Multiple bulged bases | ||
| IL_7QGH_088 | 90 degree turn | ||
| IL_7QGH_181 | No text annotation | ||
| IL_7QGH_089 | Stack outside cWW | ||
| IL_7QGH_090 | Single stack bend | ||
| IL_7QGH_091 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7QGH_092 | Single bulged G | ||
| IL_7QGH_093 | C-loop with bulged stacked A's | ||
| IL_7QGH_094 | Isolated non-canonical cWW pair | ||
| IL_7QGH_095 | Double sheared with non-canonical cWW | ||
| IL_7QGH_096 | No text annotation | ||
| IL_7QGH_097 | Single bulged C | ||
| IL_7QGH_098 | UAA/GAN | ||
| IL_7QGH_099 | SSU/LSU pseudoknot | ||
| IL_7QGH_100 | Single bulged U | ||
| IL_7QGH_101 | Kink-turn related | ||
| IL_7QGH_102 | No text annotation | ||
| IL_7QGH_103 | Isolated non-canonical cWW pair | ||
| IL_7QGH_104 | Tandem non-canonical cWW pairs | ||
| IL_7QGH_105 | Kink-turn | ||
| IL_7QGH_182 | No text annotation | ||
| IL_7QGH_106 | No text annotation | ||
| IL_7QGH_107 | Major groove platform | ||
| IL_7QGH_108 | Isolated cWS basepair | ||
| IL_7QGH_109 | No text annotation | ||
| IL_7QGH_110 | Kink-turn | ||
| IL_7QGH_111 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGH_112 | Major groove platform; stack outside cWW | ||
| IL_7QGH_113 | Major groove minor groove platform with tHH | ||
| IL_7QGH_114 | UAA/GAN | ||
| IL_7QGH_115 | tSH-tHW-tHS | ||
| IL_7QGH_116 | No text annotation | ||
| IL_7QGH_117 | UAA/GAN | ||
| IL_7QGH_118 | Tandem non-canonical cWW pairs | ||
| IL_7QGH_119 | tSH-tHW | ||
| IL_7QGH_120 | Single bulged U | ||
| IL_7QGH_121 | No text annotation | ||
| IL_7QGH_122 | tSH-tHW-tHS | ||
| IL_7QGH_123 | 180 degree turn | ||
| IL_7QGH_124 | Single bulged A | ||
| IL_7QGH_125 | UAA/GAN variation | ||
| IL_7QGH_126 | No text annotation | ||
| IL_7QGH_127 | Isolated tWW turn | ||
| IL_7QGH_128 | Major groove platform; stack outside cWW | ||
| IL_7QGH_183 | No text annotation | ||
| IL_7QGH_129 | Intercalated tWH | ||
| IL_7QGH_130 | tSH-tSH-tHH-tHS | ||
| IL_7QGH_131 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_7QGH_132 | Triple sheared | ||
| IL_7QGH_133 | Single bulged C | ||
| IL_7QGH_134 | Single bulged A | ||
| IL_7QGH_135 | Kink-turn related | ||
| IL_7QGH_136 | Minor groove platform, major groove intercalation | ||
| IL_7QGH_137 | Major groove intercalation | ||
| IL_7QGH_138 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGH_184 | No text annotation | ||
| IL_7QGH_139 | UAA/GAN related | ||
| IL_7QGH_140 | Bulged stacked bases | ||
| IL_7QGH_141 | No text annotation | ||
| IL_7QGH_142 | Major groove platform | ||
| IL_7QGH_143 | No text annotation | ||
| IL_7QGH_144 | Single bulged U | ||
| IL_7QGH_145 | Minor groove platform | ||
| IL_7QGH_146 | Isolated tHS basepair with bulges | ||
| IL_7QGH_147 | Isolated non-canonical cWW pair | ||
| IL_7QGH_185 | Other IL | ||
| IL_7QGH_148 | Isolated non-canonical cWW pair | ||
| IL_7QGH_149 | No text annotation | ||
| IL_7QGH_186 | No text annotation | ||
| IL_7QGH_187 | No text annotation | ||
| IL_7QGH_150 | Single bulged U | ||
| IL_7QGH_151 | Double sheared | ||
| IL_7QGH_152 | Single bulged U | ||
| IL_7QGH_153 | Single stack bend | ||
| IL_7QGH_154 | Major groove platform | ||
| IL_7QGH_155 | Major groove platform | ||
| IL_7QGH_156 | Major groove minor groove platform with extra cWW | ||
| IL_7QGH_157 | Double sheared with non-canonical cWW | ||
| IL_7QGH_158 | Major groove platform | ||
| IL_7QGH_159 | Isolated non-canonical cWW with bulges | ||
| IL_7QGH_160 | No text annotation | ||
| IL_7QGH_161 | Major groove platform with intercalation | ||
| IL_7QGH_162 | Single bulged A | ||
| IL_7QGH_163 | tSH-tHS-tHW | ||
| IL_7QGH_164 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7QGH_165 | C-loop | ||
| IL_7QGH_166 | UAA/GAN related, with intercalation | ||
| IL_7QGH_167 | Multiple bulged bases | ||
| IL_7QGH_168 | UAA/GAN with extra cWW | ||
| IL_7QGH_169 | Single bulged A | ||
| IL_7QGH_170 | No text annotation | ||
| IL_7QGH_171 | Major groove intercalation | ||
| IL_7QGH_172 | Multiple bulged bases with non-canonical cWW | ||
| IL_7QGH_173 | tHS double platform | ||
| IL_7QGH_174 | Major groove intercalation | ||
| IL_7QGH_175 | No text annotation | ||
| IL_7QGH_176 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGH_177 | Symmetric double minor groove platform | ||
| IL_7QGH_178 | Bacterial 5S Loop E |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_7QGH_001 | 1/0/36:39, 1/0/403:406, 1/0/436:440, 1/0/497:500, 1/0/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_7QGH_002 | 1/0/36:39, 1/0/403:406, 1/0/436:442, 1/0/492:500, 1/0/545:548 | No text annotation | homologous J5_5J7L_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QGH_001 | No text annotation | ||
| J3_7QGH_028 | No text annotation | ||
| J3_7QGH_002 | No text annotation | ||
| J3_7QGH_029 | No text annotation | ||
| J3_7QGH_003 | No text annotation | ||
| J3_7QGH_004 | No text annotation | ||
| J3_7QGH_005 | No text annotation | ||
| J3_7QGH_006 | No text annotation | ||
| J3_7QGH_007 | No text annotation | ||
| J3_7QGH_008 | No text annotation | ||
| J3_7QGH_030 | No text annotation | ||
| J3_7QGH_037 | No text annotation | ||
| J3_7QGH_009 | No text annotation | ||
| J3_7QGH_010 | No text annotation | ||
| J3_7QGH_031 | No text annotation | ||
| J3_7QGH_011 | No text annotation | ||
| J3_7QGH_012 | No text annotation | ||
| J3_7QGH_032 | No text annotation | ||
| J3_7QGH_013 | No text annotation | ||
| J3_7QGH_014 | No text annotation | ||
| J3_7QGH_033 | No text annotation | ||
| J3_7QGH_015 | No text annotation | ||
| J3_7QGH_034 | No text annotation | ||
| J3_7QGH_016 | No text annotation | ||
| J3_7QGH_017 | No text annotation | ||
| J3_7QGH_018 | No text annotation | ||
| J3_7QGH_019 | No text annotation | ||
| J3_7QGH_020 | No text annotation | ||
| J3_7QGH_021 | No text annotation | ||
| J3_7QGH_035 | No text annotation | ||
| J3_7QGH_022 | Kink-turn 3-way junction | ||
| J3_7QGH_036 | No text annotation | ||
| J3_7QGH_023 | No text annotation | ||
| J3_7QGH_024 | No text annotation | ||
| J3_7QGH_025 | No text annotation | ||
| J3_7QGH_026 | No text annotation | ||
| J3_7QGH_027 | No text annotation | ||
| J4_7QGH_001 | No text annotation | ||
| J4_7QGH_002 | No text annotation | ||
| J4_7QGH_003 | No text annotation | ||
| J4_7QGH_004 | tRNA junction | ||
| J4_7QGH_005 | No text annotation | ||
| J4_7QGH_006 | No text annotation | ||
| J4_7QGH_007 | No text annotation | ||
| J4_7QGH_008 | No text annotation | ||
| J4_7QGH_009 | No text annotation | ||
| J4_7QGH_010 | No text annotation | ||
| J4_7QGH_011 | No text annotation | ||
| J4_7QGH_012 | No text annotation | ||
| J4_7QGH_013 | No text annotation | ||
| J4_7QGH_014 | No text annotation | ||
| J4_7QGH_015 | No text annotation | ||
| J4_7QGH_016 | tRNA junction | ||
| J5_7QGH_003 | No text annotation | ||
| J5_7QGH_004 | No text annotation | ||
| J5_7QGH_005 | No text annotation | ||
| J5_7QGH_006 | No text annotation | ||
| J5_7QGH_007 | No text annotation | ||
| J5_7QGH_008 | No text annotation | ||
| J6_7QGH_001 | No text annotation | ||
| J6_7QGH_002 | No text annotation | ||
| J7_7QGH_001 | No text annotation | ||
| J7_7QGH_002 | No text annotation |
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