3D structure

PDB id
7QGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli disome - collided 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.48 Å

Loop

Sequence
CGAAAUUCCUUG*CCUG
Length
16 nucleotides
Bulged bases
7QGH|1|N|A|1938, 7QGH|1|N|U|1944, 7QGH|1|N|U|1963
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QGH_141 not in the Motif Atlas
Homologous match to IL_7A0S_072
Geometric discrepancy: 0.1197
The information below is about IL_7A0S_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04332.3
Basepair signature
cWW-L-R-L-cWW-L-L-R-L-R-L
Number of instances in this motif group
2

Unit IDs

7QGH|1|N|C|1934
7QGH|1|N|G|1935
7QGH|1|N|A|1936
7QGH|1|N|A|1937
7QGH|1|N|A|1938
7QGH|1|N|U|1939
7QGH|1|N|U|1940
7QGH|1|N|C|1941
7QGH|1|N|C|1942
7QGH|1|N|U|1943
7QGH|1|N|U|1944
7QGH|1|N|G|1945
*
7QGH|1|N|C|1961
7QGH|1|N|C|1962
7QGH|1|N|U|1963
7QGH|1|N|G|1964

Current chains

Chain N
23S rRNA

Nearby chains

Chain 0
Small subunit ribosomal RNA; SSU rRNA
Chain P
50S ribosomal protein L2
Chain u
Transfer RNA; tRNA

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