3D structure

PDB id
7QGH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli disome - collided 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
4.48 Å

Loop

Sequence
GGUG*CUAAC
Length
9 nucleotides
Bulged bases
7QGH|1|N|A|2872, 7QGH|1|N|A|2873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QGH_172 not in the Motif Atlas
Homologous match to IL_5J7L_353
Geometric discrepancy: 0.0647
The information below is about IL_5J7L_353
Detailed Annotation
Multiple bulged bases with non-canonical cWW
Broad Annotation
Multiple bulged bases with non-canonical cWW
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

7QGH|1|N|G|2843
7QGH|1|N|G|2844
7QGH|1|N|U|2845
7QGH|1|N|G|2846
*
7QGH|1|N|C|2870
7QGH|1|N|U|2871
7QGH|1|N|A|2872
7QGH|1|N|A|2873
7QGH|1|N|C|2874

Current chains

Chain N
23S rRNA

Nearby chains

Chain a
50S ribosomal protein L17
Chain c
50S ribosomal protein L19

Coloring options:


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