IL_7QGN_012

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7QGN|1|0|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1207

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7QGN|1|0|G|147
7QGN|1|0|G|148
7QGN|1|0|A|149
7QGN|1|0|U|150
7QGN|1|0|A|151
7QGN|1|0|A|152
7QGN|1|0|C|153
*
7QGN|1|0|G|168
7QGN|1|0|C|169
7QGN|1|0|U|170
7QGN|1|0|A|171
7QGN|1|0|A|172
7QGN|1|0|U|173
7QGN|1|0|A|174
7QGN|1|0|C|175

Current chains

Chain 0

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20