IL_7QGN_038

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0857

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7QGN|1|0|G|887
7QGN|1|0|G|888
7QGN|1|0|A|889
7QGN|1|0|G|890
7QGN|1|0|U|891
7QGN|1|0|A|892
7QGN|1|0|C|893
7QGN|1|0|G|894
*
7QGN|1|0|U|905
7QGN|1|0|A|906
7QGN|1|0|A|907
7QGN|1|0|A|908
7QGN|1|0|A|909
7QGN|1|0|C|910

Current chains

Chain 0

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S12