IL_7QGN_073

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_073 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0786

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7QGN|1|N|C|239
7QGN|1|N|C|240
7QGN|1|N|A|241
7QGN|1|N|G|242
7QGN|1|N|U|243
7QGN|1|N|A|244
7QGN|1|N|G|245
*
7QGN|1|N|C|253
7QGN|1|N|G|254
7QGN|1|N|A|255
7QGN|1|N|A|256
7QGN|1|N|C|257
7QGN|1|N|G|258

Current chains

Chain N

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L15

Chain q

50S ribosomal protein L35